Difference between revisions of "Phylogenetic Trees"
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|resarea=Machine Learning | |resarea=Machine Learning | ||
|restopic=Information Geometry; Stocastic Optimization; Evolutionary Computation | |restopic=Information Geometry; Stocastic Optimization; Evolutionary Computation | ||
− | |status= | + | |status=Closed |
|start=2009/05/01 | |start=2009/05/01 | ||
|level=Bs | |level=Bs | ||
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# Emmanuel Paradis. '''Analysis of Phylogenetics and Evolution with R'''. Springer, 2006. | # Emmanuel Paradis. '''Analysis of Phylogenetics and Evolution with R'''. Springer, 2006. | ||
# Charles Semple and Mike Steel. '''Phylogenetics'''. Oxford University Press, 2003. | # Charles Semple and Mike Steel. '''Phylogenetics'''. Oxford University Press, 2003. | ||
+ | |||
+ | == Useful links == | ||
+ | * [http://www.wikipedia.org Wikipedia] | ||
+ | * [http://www.r-project.org/ Homepage of the R project] | ||
+ | * [http://cran.r-project.org/ List of packages for R] | ||
+ | * [http://rwiki.sciviews.org/doku.php R Wiki] |
Latest revision as of 23:57, 3 April 2012
Phylogenetic Trees
| |
Corresponding Proposal: | Statistical inference for phylogenetic trees |
Coordinator: | MatteoMatteucci (matteo.matteucci@polimi.it) |
Tutor: | LuigiMalago (malago@elet.polimi.it) |
Collaborator: | |
Students: | RiccardoDesantis (effetti@gmail.com) |
Research Area: | Machine Learning |
Research Topic: | Information Geometry, Stocastic Optimization, Evolutionary Computation |
Start: | 2009/05/01 |
Status: | Closed |
Level: | Bs |
Type: | Thesis |
The project focus on the study, implementation, comparison and analysis of different statistical inference techniques for phylogenetic trees.
The aim of this project is to create a taxonomy of malicious software (aka malware), because new malwares are often related to the older ones, creating something like an evolutionary relationship between them.
The framework used is R, a software environment for statistical computing which already provide a set of classes implementhing those phylogenetic inference models and methods, good enough to start.
We already have got a very large amount of data about classified malwares (collected by a team of PoliMi researchers), so we just have to test how standard phylogenetic methods react to such an enormous group of data.
Bibliography
- Joseph Felsenstein. Inferring Phylogenies. Sinauer Associates, Inc., 2004.
- Barry G. Hall. Phylogenetic trees made easy: A How-To manual. Sinauer Associates, Inc., third edition, 2008.
- Masatoshi Nei and Sudhir Kumar. Molecular Evolution and Phylogenetics. Oxford University Press, 2000.
- Emmanuel Paradis. Analysis of Phylogenetics and Evolution with R. Springer, 2006.
- Charles Semple and Mike Steel. Phylogenetics. Oxford University Press, 2003.